67 minisatellites studied on chromosome 22:
Click on a minisatellite name to view allele size and frequency data
Repeat name |
dbSNP
ss# |
Physical position (kb) |
Unit length |
Copy number |
Total length |
Percent matches |
Sequence |
Associated gene |
left primer |
right primer |
nbr of typed strains |
nbr of alleles |
||||
1528 |
41 |
21 |
855 |
91% |
IL17R |
CTAGCCTTACCCATCCCAACTAGCCTTACC |
CAAGGAATCCTGACTGGTAGTGGTGCT |
68°C |
28 |
6 |
940-1500 bp |
|||||
|
1571 |
62 |
25 |
1548 |
94% |
CECR5 |
CTACTTCCCCTGCTTAGGAGCTTAGCCATC |
GACTTATGAATCAATCAAGGGCTTGTGCTG |
68 °C |
28 |
5 |
900-1700 bp |
||||
3522 |
36 |
20 |
719 |
86% |
|
CCCATGTATGTGTGCATTTCTCTATCCATT |
CTGACACTCCATCAGTAGGATGGACACTG |
64°C |
28 |
3 |
825-905 bp |
|||||
|
3635 |
20 |
149 |
2987 |
77% |
|
GGGAAGGCATGAGAGAGATGCTAAGTGATA |
ATCAGGAAACCCAACCCTTGAAATGCTCTT
|
|
28
|
failed
|
failed
|
||||
4095 |
19 |
24
|
459
|
77%
|
|
TCTTCTCATTACAAAAGAAGCATGTTCAAA
|
AACTCCAGGAAACTGGCAAGTCAGTCAG
|
59°C
|
28
|
2
|
555-595
bp |
|||||
10395 |
23 |
59
|
1362
|
79%
|
|
GTTTCCCAATGCAAGTGTTTTGGTTTATTT
|
GGAGACTAACAGTGGCTACGGGATGTGTTA
|
60°C
|
28
|
2
|
1300-1600bp
|
|||||
11741 |
43 |
12
|
506
|
73%
|
|
ACACTTACCTCCATAGTGTGTGGCTGTGT
|
GAGGATGACCATGGGTATAATGCACAA
|
68°C
|
28
|
3
|
630-800
bp |
|||||
|
12766 |
21 |
26
|
521
|
79%
|
|
AGCCCAGAGGTTCAAGGCTACGATTAG
|
CACCCCGGCTGTGTGTGTAACCTCT
|
68°C
|
28
|
1
|
650
bp |
||||
|
13055 |
29 |
23
|
681
|
87%
|
KREMEN
|
ACCAATGTAATCACAGGGTCCTTAGAGAGG
|
GAGAATCCATTCCTTGCCTTTTCAACCT
|
68°C
|
28
|
9
|
1020-4700
bp |
||||
|
15802 |
23 |
26
|
587
|
84%
|
KIAA0645
|
AGCTTTTTCTACCACAGATACCCTCACCTG
|
AAGGGCCCCCAAGTCACTGGAATACAT
|
60°C
|
28
|
1
|
1200
bp |
||||
|
16228 |
21 |
83
|
1735
|
72%
|
|
GGACATGCTTGAGGGAATTTTTACTTTGTC
|
AGAGGCTCTCCCAGAGCACCTACAAT
|
68°C
|
28
|
5
|
1860-2200
bp |
||||
|
16333 |
37 |
14
|
515
|
82%
|
|
CCCAAGGTCACACAGGATGTTATATTTCTT
|
AAAGTGAGGACAGTAACACAAGGCTTATCG
|
68°C
|
28
|
1
|
670
bp |
||||
16658 |
21 |
28 |
602 |
85% |
|
ACCTGCCTGATTCCTACATTCCTACCAC |
TCAGTAATTGTTTGCTTCTCCTCTCCTTCA |
60°C |
28 |
2 |
738-880 bp |
|||||
|
18295 |
20 |
20 |
395 |
86% |
|
ATTAAGATACAGACAAAAGCAGGGATGCTG |
TAATCTTAGTTCACCCAGACATGCCCTAAG |
68°C |
28 |
8 |
1080-1300 bp |
||||
19972 |
22 |
28 |
621 |
86% |
|
CAACTCAGTCTCATTCCCACTCTGAGATTT |
TCCCATTTCCTACTTTAGAAACTTTGCGATT |
68°C |
28 |
8 |
1020-2500 bp |
|||||
|
20986 |
18 |
33 |
588 |
80% |
|
GGGAACAACAATTATCACCAGAGCCTAATA |
CTGAAGAGTTGTGTGCAAGGATGCTCT |
68°C |
28 |
1 |
700-720 bp |
||||
|
21044 |
18 |
47 |
851 |
80% |
RAC2 |
AGATGGACAGGAGAGCCAAGGCCTAAGT |
GACACAGCCTCCAGGTGACCCCACT
|
68°C
|
28
|
3
|
1420-1670
bp |
||||
21327 |
59 |
11
|
668
|
78%
|
CARD10
|
ATCCCTGGTTCTGAAATCCTCAGCTTC
|
AAGGAGAAGGAGCCAGACAATGTGGAC
|
68°C
|
28
|
3
|
320-900
bp |
|||||
21541 |
147 |
12
|
1752
|
88%
|
|
CTCAGGCTGCCTCTACACGTGAAATC
|
GTTGTCTCGTTGAAAGGAAAAGGACTGTGT
|
60°C
|
28
|
3
|
1650-2090
bp |
|||||
|
22157 |
25 |
19
|
480
|
91%
|
|
GAGAGGTCAGCTATCAGGCCCATCC
|
GCTCCTGCCACCATGTCCATCTAAT
|
58°C
|
28
|
1
|
660
bp |
||||
22447 |
57 |
10
|
552
|
97%
|
|
AAGTAAGGACTGAAAGGTCAGCATTCTTGC
|
CTCCTTACGAGTGGATGAGGCTCGTTTAT
|
68°C
|
28
|
2
|
680-740
bp |
|||||
23529 |
30 |
15
|
455
|
81%
|
|
GAAGCAAGAAACAGAGGGATTTAGGATTCA
|
CTTCTGCATCCTCTGCACCCAGCAT
|
60°C
|
28
|
2
|
710-770
bp |
|||||
|
25144 |
29 |
12
|
356
|
87%
|
KIAA1031
|
GCCCTGCCCTAGATGAAGTAAGTTAGAATC
|
ACAGGATCTCATGAACCTGAGTCAGTGG
|
68°C
|
28
|
1
|
533
bp |
||||
26130 |
22 |
16
|
353
|
88%
|
|
AGAGACGAATAAACCAGTGAGGGTAAAAGG
|
TGTAAAAGGACATTAGCAAACCACACGATT
|
68°C
|
28
|
2
|
500-520
bp |
|||||
27086 |
47 |
28
|
1313
|
76%
|
|
CCACCGAAACTTAAATATTCCCCACCTATG
|
GTCAGCCATGAGGAGAAGGAGAATGAG
|
68°C
|
28
|
14
|
1060-2150
bp |
|||||
|
27209 |
20 |
21
|
426
|
74%
|
|
CAGGTAGATGTTCCCAAAGGTAGAACAGGT
|
CTAAAACGGAAGCCATTATCCAATGGTGAG
|
68°C
|
28
|
1
|
629
bp |
||||
27382 |
26 |
15
|
401
|
85%
|
FLJ23588
|
CAGCTTCAGAATCTAAACCCCTGGTTCTAA
|
CTGAGCAGAGCCAAGGACAATAATAGAGAC
|
68°C
|
28
|
4
|
430-640
bp |
|||||
|
27398 |
20 |
68
|
1364
|
82%
|
FLJ23588
|
CTCTGCAGAAAGCATCTTCCCTTCTTGA
|
TACAGCTTCCATCTGCGTGGTGCTTTAGAC
|
68°C
|
28
|
1
|
1530
bp |
||||
27654 |
28 |
33
|
918
|
91%
|
SULT4A1
|
AGTAGCCTCAGTAAATCGAGGAACTCTCCA
|
CTTAACTGACGCCTTGCTCTCTGTCGTAT
|
63°C
|
28
|
7
|
600-1200
bp |
|||||
|
27773 |
35 |
11
|
387
|
80%
|
|
CTCCAAAACCAAAAATCTCTATGACCCAAT
|
CAAAGTCACATGCTTTACCCTCAAACAAAG
|
58°C
|
28
|
1
|
513
bp |
||||
28490 |
36 |
29
|
1037
|
88%
|
|
CCCCAGCTGACCTACCTTGATCACTAT
|
TATAGTTGGGTTTAGGCCCACCATCTGTTA
|
68°C
|
28
|
4
|
1100-1400
bp |
|||||
29067 |
41 |
18
|
703
|
82%
|
|
AGAAGCGGCTCAGCAAATTACAGTGTGAAC
|
ACTTTTCATCCCTCGCACCAGCTCAG
|
60°C
|
28
|
19
|
630-1900
bp |
|||||
|
30257 |
35 |
15 |
513 |
71% |
CELSR1 |
GTGTGTACGAGGCTGAGATCTAGGGATG |
CGTGCCTCCACTGGTACTTGACACC |
68°C |
28 |
5 |
720-1200 bp |
||||
30336 |
20 |
88 |
1761 |
84% |
|
GAGTGTGCACTGAACCCATTCTTTTATCAG |
GTTCTGGCTTCTGAGGGTAACTGGTTATG |
68°C |
28 |
3 |
1620-1850 bp |
|||||
|
30404 |
46 |
16 |
755 |
90% |
KIAA0767 |
AAAATGTCCAGCACGCTTTTGAACTAGAGA |
CTTCTTTCAGATATGGACCCTGGCGTGTTT
|
failed
|
28
|
failed
|
failed
|
||||
30541 |
24 |
25
|
595
|
98%
|
LOC150386
|
CCTTTTTATGGCTAAGTAGTATTCCATCGT
|
CGTTCAGGGAAAGAAAAACAGAGATGACTT
|
68°C
|
28
|
12
|
900-1550
bp |
|||||
30860 |
67 |
14
|
960
|
82%
|
C22orf4
|
GTCTGGGTCGGTTGCAGTTGACAGTAG
|
CCAGCTGGATAAACTCTAAAGGTCTCAGGA
|
68°C
|
28
|
2
|
1115-1180
bp |
|||||
|
31534 |
17 |
22
|
373
|
70%
|
|
CTAAACCATTTGTCACCCTCTGGATTTGTT
|
CATAAGTGTGGAATTGTTGGTGGTTCTGAT
|
68°C
|
28
|
1
|
500-605
bp |
||||
31865 |
19 |
23
|
439
|
81%
|
|
AGACTCTGCCAGGTGGAAATTTAAGATTGG
|
GCCTGATATGCCAGAGGAGATGCTTAG
|
68°C
|
28
|
2
|
615-635
bp |
|||||
|
32217 |
40 |
17
|
685
|
79%
|
|
ATGGTCAGCAAATAAACACCCCATGTATTT
|
GGCTGTTATCAGATTGTAGAGCAGAGCATC
|
64°C
|
28
|
1
|
811
bp |
||||
32267 |
58 |
15
|
872
|
77%
|
hypothetical
protein |
AGAAGCTTGAAAGACAAGACTGGAGTGTCC
|
TCTGAGCTCTTCCCAGGTATTCCACATATT
|
63°C
|
28
|
4
|
630-1040
bp |
|||||
|
32298 |
21 |
25
|
529
|
92%
|
hypothetical
protein |
AACCACCTTCACATTTGAGAACTCGCTCTG
|
ACACACCCAACCCATCATCCTGTCTCTAT
|
68°C
|
28
|
1
|
700
bp |
||||
|
32458 |
23 |
43
|
996
|
80%
|
hypothetical
protein |
AAAGACCTCAGGGTGTAAGGACAGAAGAAA
|
TAGGCCATCCTAAAGGAAGGGACAGAG
|
68°C
|
28
|
5
|
1400-1600
bp |
||||
|
32693 |
34 |
12
|
418
|
88%
|
|
ACCCACACAGCCTCCGTGAATTATTTAGTA
|
AACCTACAAGAGCACTTGGAAACCGAAG
|
68°C
|
28
|
1
|
600
bp |
||||
32741 |
18 |
33
|
592
|
78%
|
|
ACAAAGAGTGGACCCTGAATCACAATGAAT
|
AAAAATTTCCGCTGTTTAAGCTGCCTGGAC
|
68°C
|
28
|
5
|
705-805
bp |
|||||
32911 |
30 |
14
|
411
|
92%
|
|
ACACTGAACATTGGGAAGGGCTTCTTCTAC
|
CCTGTGGCTTCTTCCTGTCTCAGGTAAC
|
68°C
|
28
|
3
|
500-700
bp |
|||||
|
32915 |
26 |
19
|
489
|
81%
|
|
ACCTTCAATATCCGTTCACCCTCTGTATCT
|
AAAAAGTGCTGGGAAAAGCCCTCATCT
|
68°C
|
28
|
1
|
594
bp |
||||
32948 |
32 |
21
|
671
|
82%
|
|
CAGTTCCTCAAACCCCAAGTGAAGATGA
|
CAGGATACTAGGGCCTAAGCAGTTTGGACA
|
68°C
|
28
|
5
|
850-1500
bp |
|||||
32980 |
43 |
13
|
559
|
90%
|
|
CACTATCACAAGAACAGCACGGGAAAACCT
|
CACATGTGAGGCTGCATGGGAAGAAC
|
68°C
|
28
|
3
|
735-860
bp |
|||||
33057 |
33 |
33
|
1086
|
96%
|
LOC129238
|
GCGTTTAGAAAGACAGGTGCAAGAATTAGG
|
AGTGGTTGAGCGTCTCCTTCTGTCTCAAT
|
68°C
|
28
|
19
|
550-2500
bp |
|||||
33318 |
45 |
22
|
1024
|
88%
|
|
AGAACACAGCAGCTGAAATGCCATACC
|
CCTAACAAAGAAAGGTCAGAGTGAGCTGTG
|
68°C
|
28
|
2
|
820-1270
bp |
|||||
|
33400 |
45 |
16
|
736
|
82%
|
|
TGCTAGGAAATCCTTGTCTGCTGTGTATAA
|
CAGCACATGGCATTTGTTAGGATACACATA
|
68°C
|
28
|
1
|
850
bp |
||||
|
33414 |
38 |
11
|
420
|
93%
|
|
ACTCTCCCTCCCATCCTCCACTCTC
|
CTGCTGTTGCTTCTGCTCTCAGTTCATA
|
68°C
|
28
|
1
|
572
bp |
||||
33419 |
32 |
18
|
563
|
91%
|
|
CTCCTCTCAGACCCTGTCACAGAACAAAC
|
GCTCATGAGAAAACAGTAGATCCATCTGAG
|
68°C
|
28
|
2
|
691-755
bp |
|||||
33434 |
31 |
38
|
1172
|
77%
|
|
GAAGAGACCTCATCATGGGCAGTCC
|
ATCCTCTACTAGCCCTGATAGCACCACATC
|
63°C
|
28
|
5
|
1240-1500
bp |
|||||
33545 |
33 |
11
|
359
|
91%
|
|
CCTCACTGCTCATTGGCATCAGACAT
|
GGTACTGCTTCTTGAGGACAGGGCTAACT
|
68°C
|
28
|
2
|
545-578
bp |
|||||
33592 |
47 |
13
|
611
|
98%
|
BRD1
|
AAGACCCAAGATCTGAACCCTCAACTTCCT
|
GTGACTTGGCTTTCCATCTCTCCTCTGT
|
68°C
|
28
|
3
|
700-925
bp |
|||||
|
33618 |
37 |
19
|
702
|
71%
|
|
ATGGAGAGTGGGGGCCCTTGAGTTAG
|
CTTTTCTTGCAACCTTAAAGGGCATCTG
|
68°C
|
28
|
1
|
872
bp |
||||
33817 |
19 |
129
|
2459
|
76%
|
|
ACAACACAATAAACAAATCTGGCCCAACTC
|
AGGAGTTTCTTAACTGTGACAGGGGATGCT
|
68°C
|
28
|
2
|
2600-3500
bp |
|||||
33825 |
43 |
21
|
890
|
93%
|
|
GTGGGGCAAGAGGCATCTCCGTGAGT
|
CGCCCGGCAATAGGGGGGGTCTTTA
|
68°C
|
28
|
19
|
400-3500
bp |
|||||
33854 |
18 |
42
|
751
|
81%
|
|
GCCCCTTCCTCTCTGGTTCCATACTG
|
CTCTGCCTTCAGAACCCCATACCTCT
|
58°C
|
28
|
4
|
930-1400
bp |
|||||
33864 |
23 |
27
|
625
|
91%
|
MLC1
|
CAAAATAATTGGAGTAGGAGTGGGTGAAGC
|
AAGTGGTTTTGCACCCAAATCATTAGAAGA
|
68°C
|
28
|
3
|
755-825bp
|
|||||
33965 |
75 |
16
|
1224
|
83%
|
|
AAAGCAGAAAGTGCATCTGGAAAACAAAG
|
TAAAGATCCTTGCATGTTTTCTGAGGGATG
|
68°C
|
28
|
3
|
1250-1675
bp |
|||||
|
33983 |
52 |
10
|
543
|
74%
|
PP2447
|
CAGGAGGCGCGTGGGACTACACTT
|
GGCCGCCTTCCTCCACTCTCACCT
|
68°C
|
28
|
1
|
793
bp |
||||
34031 |
27 |
54
|
1456
|
75%
|
GCP6
|
AATACCAGCACGATCGATTCTATCAGGACA
|
CCCTGTGGAGACAGTGTTTTGTGATG
|
68°C
|
28
|
2
|
1850-1950
bp |
|||||
|
34182 |
62 |
28
|
1732
|
93%
|
KIAA0685
|
TCTGTAAAATGGAGTGAGAGCAGTGTCTGTTT
|
AGACCCACGACCCAGAGAGCCAAGTG
|
failed
|
28
|
failed
|
failed
|
||||
|
34393 |
43 |
17
|
695
|
95%
|
|
CTGATTGGTTGGGTTGGAGACAAAATCAT
|
CCTCCATGGGCGCAGGTTGAACTAA
|
failed
|
28
|
failed
|
failed |