Repeat name
|
dbSNP ss#
|
Physical position (kb)
|
Unit length
|
Copy number
|
Total length
|
Percent matches
|
Sequence
|
Associated gene
|
left primer
|
right primer
|
PCR conditions (AT)
|
nbr of typed strains
|
nbr of alleles
|
Polymorphism index
|
Copy number range
|
Estimation mode
|
CEB256
|
6313628
|
220
|
26
|
49
|
1277
|
85%
|
Alignment
|
|
CAACCTCCACCTCCCAGAAAAAGAAAG
|
CGTGCTGTGGACGTATTAACTTACTGGAAA
|
68°C
|
28
|
3
|
0.566
|
900-1450 bp
|
1
|
CEB255
|
|
3948
|
38
|
25
|
962
|
83%
|
Alignment
|
|
CTGGAACCCTGACAATTTTCAAGTGAGG
|
TTTTTGTTGCTGGAACCCTGACAATTTA
|
55°C
|
28
|
1
|
0
|
1050 bp
|
1
|
CEB258
|
|
4445
|
22
|
29
|
633
|
91%
|
Alignment
|
|
ACATAACAATCAAAGCAGAGCCTCACTGAC
|
TACATTTTCTGACTTCTGTGGTCTTCATGG
|
59°C
|
28
|
1
|
0
|
720 bp
|
1
|
CEB259
|
|
6028
|
26
|
97
|
2523
|
73%
|
Alignment
|
|
ATCATTTGTGTTGCCACAGAAGAATAACTG
|
ACAGAACCAAAAGCCAAATAAACCTCATGT
|
failed
|
28
|
failed
|
failed
|
failed
|
1
|
CEB260
|
|
7748
|
73
|
10
|
748
|
93%
|
Alignment
|
|
GATGTAGTTGCATTGCTTGAGTGCATTAAC
|
ATCGCCAAGTCATAAAGGTGTACTGTGGT
|
64°C
|
28
|
1
|
0
|
891 bp
|
1
|
CEB261
|
6313629
|
10501
|
25
|
15
|
370
|
82%
|
Alignment
|
NCAM2
|
TGCAAAATCTCTCCCTCTCTGTTGATAAAA
|
GCTTATGTATGAGGCAGCAAATAGGATCAG
|
63°C
|
28
|
4
|
0.703
|
490-550 bp
|
1
|
CEB263
|
|
19963
|
29
|
28
|
811
|
71%
|
Alignment
|
|
TTTTAAATTCTGATTTTCTTGCGAAGGTGA
|
CTTGCAGTATGAGGTCCTCTGTATCTGGTC
|
68°C
|
28
|
1
|
0
|
917 bp
|
1
|
CEB264
|
|
21556
|
30
|
32
|
959
|
79%
|
Alignment
|
|
GCACTTTTGTCCCCATGTGTCATTCTAAC
|
AACACACAGAGAGCCGCAGCAGAGAC
|
68°C
|
28
|
2
|
0.142
|
830-880 bp
|
1
|
CEB262
|
|
19540
|
30
|
16
|
481
|
85%
|
Alignment
|
|
TGACTTCAAAGAGTTTGTATTGTCACATCA
|
AATCGAAAGCTACTGTGGTTTGCTCATTTT
|
failed
|
28
|
failed
|
failed
|
failed
|
1
|
CEB267
|
|
25371
|
24
|
18
|
419
|
90%
|
Alignment
|
CHAF1B
|
TGAGAGGTCACACCTGTGAAGTAAGAATAGT
|
TATAAACATCAAGCATTTGCCAGACATGG
|
failed
|
28
|
failed
|
failed
|
failed
|
1
|
CEB265
|
6313630
|
23006
|
54
|
13
|
680
|
74%
|
Alignment
|
|
CATACAGATACGGATGATTCTTGCTCTTGG
|
TCTATCTTATTTGACCTCTGCCCGTAGTCC
|
68°C
|
28
|
2
|
0.142
|
830-880 bp
|
1
|
CEB234
|
6313631
|
23639
|
30
|
13
|
396
|
82%
|
Alignment
|
|
CGAGGTGCCCCAAGGAGGGGAGGAG
|
GAGAGGCTGCCGTCCCCCGATTGCT
|
68°C
|
28
|
2
|
0.356
|
610-640 bp
|
1
|
CEB266
|
6313632
|
24912
|
45
|
13
|
565
|
72%
|
Alignment
|
|
GCACCAACCAGATAGGCCACTGAGAT
|
ATTTCTCTGGGTATTTTTCATCTGGAAGCA
|
68°C
|
28
|
2
|
0.356
|
821-866 bp
|
1
|
CEB215
|
|
22291
|
28
|
97
|
2705
|
87%
|
Alignment
|
|
GAGCAAGACTCCGATTCGAACAATG
|
TGAGATAAAATAAGGAATCAAATACTTCGTTG
|
failed
|
28
|
failed
|
failed
|
failed
|
1
|
CEB257
|
|
29529
|
18
|
25
|
446
|
75%
|
Alignment
|
|
CAGGTAGTATTATCATTGATCTGGTGGAAC
|
CTCTGCTCTCACTCTGCCTCCCTTCT
|
failed
|
28
|
failed
|
failed
|
failed
|
1
|
CEB236
|
|
30516
|
23
|
28
|
639
|
74%
|
Alignment
|
|
TGCATTTTCTTCTAGGGGAGTATGACAAGT
|
CTACTTGGGATGCTGAGGCAGGATTATG
|
68°C
|
28
|
1
|
0
|
900 bp
|
1
|
CEB271
|
|
30440
|
20
|
104
|
2084
|
75%
|
Alignment
|
TMPRSS2
|
ACTCCTTGAGTCTTGGAGGGACTGACAC
|
ACTCATCTCCTGGTGGAGAAGACACTCAC
|
57°C
|
28
|
10
|
0.832
|
1100-2900 bp
|
1
|
CEB270
|
6313634
|
30145
|
22
|
24
|
518
|
83%
|
Alignment
|
hypothetical gene
|
CTTGAGGAGGACTGAGCCTTCAGAAGTTAG
|
TAAACTAGATGAAAGAGTTGCTGCGCCTGA
|
68°C
|
28
|
2
|
0.392
|
642-690 bp
|
1
|
CEB235
|
|
29314
|
39
|
17
|
665
|
90%
|
Alignment
|
DSCAM
|
GCTTTCAGTGGCTCTGGAGGTTTTAGTAAG
|
AATAGCGAAGAGGATGTTCCCAAACAAAAT
|
68°C
|
28
|
2
|
0.041
|
1500-1850 bp
|
1
|
CEB268
|
6313633
|
26682
|
22
|
17
|
383
|
72%
|
Alignment
|
KCNJ6
|
GGAAAGTGACAGCTCCCTGTTTGAATTAT
|
AAGACATAAGTGCTCCAGGTGTTAACAGGA
|
68°C
|
28
|
6
|
0.636
|
500-690 bp
|
1
|
CEB269
|
|
28940
|
74
|
14
|
1021
|
97%
|
Alignment
|
|
CTGGAGGCCAGAAGTTCAAAATCAAGTT
|
TATCCAAGTGGGCTCTAGATCCAGTGATAC
|
68°C
|
28
|
14
|
0.876
|
1600-4500 bp
|
1
|
CEB272
|
6313635
|
30670
|
34
|
12
|
410
|
98%
|
Alignment
|
|
AATTGTTGAGGAGACTTCATATTGCTTTCC
|
GACATCCAAAAGGCCAATGAGTATATGAAA
|
59°C
|
28
|
2
|
0.471
|
600-640 bp
|
1
|
CEB273
|
|
30771
|
28
|
14
|
379
|
80%
|
Alignment
|
|
CAGCTTGGGCAATGGAGTGAGACTGTCT
|
ACTGCACTCCAGCCTCTCCCATCCCTA
|
68°C
|
28
|
1
|
0
|
580 bp
|
1
|
CEB239
|
6313639
|
31675
|
37
|
12
|
446
|
93%
|
Alignment
|
PDE9A
|
GAGACAGTATCAGACACACCAGACAAAAGC
|
CTGTACCCGGTTAGATCCACACCCTATG
|
68°C
|
28
|
3
|
0.564
|
650-850 bp
|
1
|
CEB278
|
6313640
|
31833
|
31
|
30
|
921
|
83%
|
Alignment
|
WDR4
|
CTGAACGAATTAAGTGATGTACCCAGAAGC
|
GGAATGTTTAGCAGCAACCGAATATACCAG
|
64°C
|
28
|
4
|
0.693
|
810-1200 bp
|
1
|
CEB274
|
6313636
|
30829
|
29
|
36
|
1045
|
77%
|
Alignment
|
|
AAAGAGCCAAGTGAAGTCCCTTCTCTGAA
|
CTTCTTGGGAACATCCATGGCTCAG
|
68°C
|
28
|
8
|
0.6
|
660-1420 bp
|
1
|
CEB275
|
|
31147
|
34
|
37
|
1284
|
77%
|
Alignment
|
|
AAACAAAGAGTCCAGGAGACGCCTGAGAGA
|
AATCTGCTCTTTGCCTCCATTCCTCAT
|
68°C
|
28
|
1
|
0
|
1510 bp
|
1
|
CEB276
|
6313637
|
31252
|
22
|
35
|
769
|
78%
|
Alignment
|
ABCG1
|
GGGTTCTGGTCTGCAGTTTTTATCTGAGTT
|
AGGTTCAGTATTTGAAACAGCCAGATGGTA
|
68°C
|
28
|
2
|
0.191
|
840-870 bp
|
1
|
CEB237
|
6313638
|
31420
|
44
|
19
|
752
|
81%
|
Alignment
|
UBASH3A
|
ATGGAATCCAGAGAAGCAAGTTACACCAAT
|
CAGTATTCTCACCACTGCACTCAGCAAGT
|
68°C
|
28
|
2
|
0.293
|
910-955 bp
|
1
|
CEB238
|
|
31572
|
51
|
59
|
3015
|
94%
|
Alignment
|
|
GAGTAGCCACAGGACAGAACTGAGAAGC
|
CCTGAAGAGAAGACAAGGAGAAAGGATGAC
|
68°C
|
28
|
7
|
0.789
|
830-3000 bp
|
1
|
CEB240
|
6313641
|
32177
|
17
|
53
|
883
|
80%
|
Alignment
|
|
AGGTGTACCAGTACAGCAGCTTTGGACCTA
|
GTTTGTCTCCTCTTGCCCTCTGGAAAGTAA
|
68°C
|
28
|
3
|
0.513
|
900-1060 bp
|
1
|
CEB277
|
|
31619
|
114
|
14
|
1603
|
78%
|
Alignment
|
|
TGTAATAATTCATCCACCCAGATTTGTATGC
|
ATCTTAAATGGGCAGGTTAATGGATTGATG
|
57°C
|
28
|
1
|
0
|
1650 bp
|
1
|
CEB291
|
|
34854
|
28
|
22
|
602
|
85%
|
Alignment
|
|
ACAGCTCAAAGTGCGAGACAGGAACAC
|
GGAGGCCCCTCACAGGGAGTAGATA
|
68°C
|
28
|
10
|
0.870
|
800-1300 bp
|
1
|
CEB248
|
6313654
|
34384
|
36
|
37
|
1339
|
70%
|
Alignment
|
COL18A1
|
CCTGTACATAGTGAAGGTGGGTTCTATTGC
|
GTAAACCCAACATCGAGAAAACAAGGATGG
|
68°C
|
28
|
5
|
0.636
|
830-1800 bp
|
1
|
CEB286
|
6313655
|
34390
|
18
|
34
|
609
|
82%
|
Alignment
|
COL18A1
|
ACTTCCTCCACTCCTGGACATCGTAGTCTC
|
CAAGACCCAGCTGTCCTCCAGGAAT
|
64°C
|
28
|
5
|
0.660
|
565-850 bp
|
1
|
CEB287
|
6313656
|
34454
|
44
|
10
|
448
|
77%
|
Alignment
|
COL18A1
|
ATCCTAACTTTCAGGGGCTTTGGTCCT
|
AGCTGGAAGAAAGCAGCAGGGTCAC
|
68°C
|
28
|
3
|
0.513
|
430-570 bp
|
1
|
CEB288
|
6313657
|
34474
|
66
|
11
|
694
|
86%
|
Alignment
|
SLC19A1
|
AATTAGAAGAGCAGTGAAACCACAGAGTCG
|
AAGACTAGTTTCTTTGCAGAGCACCAGAAG
|
68°C
|
28
|
3
|
0.551
|
690-822 bp
|
1
|
CEB249
|
6313658
|
34683
|
51
|
22
|
1132
|
88%
|
Alignment
|
|
TTTTTGCTTTCCGTAAGATAACAATTTTCC
|
AAGCGAAGAGAGTGTGTGTGACAGTGACTA
|
68°C
|
28
|
2
|
0.499
|
1300-1350 bp
|
1
|
CEB290
|
6313659
|
34830
|
52
|
12
|
627
|
91%
|
Alignment
|
LOC115381:
|
GATACTTCTCCAGCAGGGGAAACAAGAAGT
|
CTGAGCAGGGACAGAGGCTCTCATCT
|
68°C
|
28
|
4
|
0.640
|
670-920 bp
|
1
|
CEB246
|
6313652
|
33920
|
43
|
12
|
496
|
87%
|
Alignment
|
hypothetical gene
|
GATGCTGACTCACGTGGCTTCTCTGT
|
ATCATTTTAGATCCATGACTCCCCTTGGA
|
68°C
|
28
|
5
|
0.659
|
600-1350 bp
|
1
|
CEB250
|
6313660
|
34932
|
23
|
32
|
744
|
94%
|
Alignment
|
COL6A1
|
CTTTGAGGTGAGTGGTGACTCCTGCTC
|
CAGCAGCTAATTCTAACGTTTAAGGTCATCC
|
68°C
|
28
|
19
|
0.930
|
540-1850 bp
|
1
|
CEB292
|
6313661
|
34950
|
33
|
17
|
552
|
91%
|
Alignment
|
|
GGGACCCTGCATTTCCGTTTCAGGT
|
GAATCCCATGAGGCAGCTGAGAGAG
|
60°C
|
28
|
5
|
0.546
|
575-1100 bp
|
1
|
CEB251
|
6313662
|
34992
|
39
|
40
|
1575
|
88%
|
Alignment
|
|
GGTGACAAAGTGCCAGTCAGTGATTGTAT
|
AATCATCTCTGGGGAGGTGCCGTTTACATA
|
68°C
|
28
|
3
|
0.393
|
1740-1960 bp
|
1
|
CEB252
|
6313663
|
35084
|
50
|
17
|
843
|
88%
|
Alignment
|
FTCD
|
TTTGGTGCAAGGTACAGATATCTCCTTATG
|
GAAAATGTAATCAAGGGACAGGAAGGAAAC
|
68°C
|
28
|
4
|
0.607
|
980-1330 bp
|
1
|
CEB253
|
|
35145
|
45
|
14
|
629
|
97%
|
Alignment
|
LSS
|
ACTCAGGCAGTTAGGGGTACACATCCTAT
|
CAGACTTAAATTCTCCCTTAAATTCACAAA
|
62°C
|
28
|
6
|
0.490
|
875-1100 bp
|
1
|
CEB289
|
|
34741
|
45
|
45
|
2030
|
75%
|
Alignment
|
|
ATTGCACTGTGGTTATCTGGATGTTGTTTT
|
AATTACTTATATTCCGGCCCATCTGTGTGT
|
68°C
|
28
|
1
|
0
|
5000 bp
|
1
|
CEB247
|
|
34282
|
19
|
27
|
522
|
84%
|
Alignment
|
|
GTCACCTTCGTGTTTTCTGCCATCAG
|
CCCAGGGTTATAGGACAATTTTGAACCTG
|
68°C
|
28
|
1
|
0
|
650 bp
|
1
|
CEB254
|
6313664
|
35165
|
24
|
20
|
483
|
80%
|
Alignment
|
LSS
|
ATAAACTAGGTTTTCTTGGAGCAGCAGGAG
|
AAACTTAAACGAACCGTGTTAATATGTCCA
|
68°C
|
28
|
3
|
0.203
|
630-680 bp
|
1
|
CEB284
|
6313651
|
33832
|
21
|
55
|
1164
|
86%
|
Alignment
|
|
ACTAAAGCAGTACTGGCTCCCTCCCCTCT
|
AATCCTAGGTGCATTTCCGTAAACGGTGGT
|
68°C
|
28
|
3
|
0.554
|
1300-1340 bp
|
1
|
CEB283
|
6313650
|
33711
|
17
|
55
|
936
|
80%
|
Alignment
|
|
AGAACTCTTCTGGTTTCCCGCTGCT
|
GAAGAGAACTTTCAGATCAGAGCACGAGTT
|
68°C
|
28
|
4
|
0.708
|
1020-1100 bp
|
1
|
CEB282
|
6313649
|
33481
|
20
|
21
|
416
|
77%
|
Alignment
|
|
AGAGGTGATGAGCACAGGTGGTGAGAG
|
AGCATAACACATTCTGTTCTTTGGGCATTA
|
57°C
|
28
|
3
|
0.225
|
610-710 bp
|
1
|
CEB245
|
6313648
|
33383
|
52
|
12
|
631
|
88%
|
Alignment
|
TRPC7
|
TCTGTGGATAAACGTGAATATGCCCGAAAT
|
CCCAGAATCCCATTCCTGCCCAATG
|
68°C
|
28
|
2
|
0.035
|
850-900 bp
|
1
|
CEB244
|
6313647
|
33318
|
36
|
10
|
376
|
97%
|
Alignment
|
TRPC7
|
CTGCTGTAACCCAGGCTCACAAACCT
|
ACCCTAGATGACCCTAGTGGGACCTACAC
|
68°C
|
28
|
2
|
0.168
|
640-860 bp
|
1
|
CEB243
|
6313646
|
33317
|
60
|
11
|
653
|
93%
|
Alignment
|
TRPC7
|
CCCTAGGGAGGGGAGCCTAAGACCA
|
ATACCAGAGTCCAGCCAAGTTAGCCGTTT
|
68°C
|
28
|
3
|
0.275
|
410-770 bp
|
1
|
CEB281
|
6313645
|
33286
|
35
|
11
|
393
|
83%
|
Alignment
|
C21orf2
|
GCTCAGTTCTCTCTCCTATTCGACTTGGTC
|
ATGAAGCTGACGCGGAAGATGGTTCT
|
68°C
|
28
|
3
|
0.374
|
600-670 bp
|
1
|
CEB280
|
6313644
|
33109
|
19
|
22
|
422
|
80%
|
Alignment
|
|
CTGTGAACATTTTGTAGCCATGTTGTGTTA
|
AAAGAAGAAAAGAAAAGCAGGGCTCATACC
|
68°C
|
28
|
2
|
0.071
|
590-670 bp
|
1
|
CEB242
|
6313643
|
32690
|
51
|
12
|
594
|
93%
|
Alignment
|
LOC85572
|
TTCATTCCTGTGAAGCACAGCGTTT
|
AGAAAACAGGAGACTCACCACGATCAACT
|
68°C
|
28
|
7
|
0.657
|
650-1200 bp
|
1
|
CEB241
|
6313642
|
32529
|
20
|
122
|
2432
|
86%
|
Alignment
|
HSF2BP
|
AGAGCACACACCCACCACTAAAATCACTG
|
AGTGCATGGACTGCAGATATTGGGACT
|
54°C
|
28
|
4
|
0.569
|
1980-2550 bp
|
1
|
CEB279
|
|
32246
|
34
|
18
|
617
|
76%
|
Alignment
|
|
CTTCAGGAGGCTCTGTCTCTGGGTAGAAG
|
AGAGTGTGTGTGCACAACTGTCAGTGAA
|
68°C
|
28
|
1
|
0
|
761 bp
|
1
|
CEB285
|
6313653
|
34327
|
36
|
25
|
895
|
86%
|
Alignment
|
|
AACAGAAGCTCCTGCTGATGAATAATTTCC
|
GTTTAGAGAGAGGAATGGACGCAGAGTGTC
|
59°C
|
28
|
6
|
0.298
|
880-1090 bp
|
1
|